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• OPTIM: A program for optimizing geometries and calculating reaction pathways by David J. Wales
• Rotamers in CHARMM19 by Semen A. Trygubenko and David J. Wales [pdf] [ps] [patches for CHARMM19 topology and parameter files]
• Poster "Finding rearrangement pathways" by Tetyana V. Bogdan and Semen A. Trygubenko [pdf] [gzipped ps]. This poster was presented at "Algorithms for Macromolecular Modelling IV" meeting in Leicester in August 2004
• Debian wallpaper project "Naturally Debian" by Tetyana V. Bogdan and Semen A. Trygubenko
• Presentation "Pathways and energy landscapes" by Semen A. Trygubenko [pdf] [gzipped ps]. This presentation was given at "Workshop on Energy Landscapes and Dynamics 2005", Telluride, Colorado in August 2005
• Graph transformation programs by Semen A. Trygubenko
• Semen A. Trygubenko, PhD thesis (University of Cambridge, January 2006), Pathways and Energy Landscapes