Hardbound copy of my thesis is available from Cambridge University Library. For convenience of these who cannot access it, I provide here electronic copies for each section as bzipped postscript files:

• Title page, Declaration, Acknowledgements, Dedication, Abstract, Contents, List of Abbreviations, and Glossary of Symbols [257Kb]
• Chapter 1: Introduction [187Kb]
• Chapter 2: Finding Rearrangement Pathways [2.4Mb]
• Chapter 3: Properties of Rearrangement Pathways [584Kb]
• Chapter 4: Ensembles of Rearrangement Pathways [1.3Mb]
• Chapter 5: Conclusions [184Kb]
• Appendix A: Rotamers in the CHARMM19 force field [1.5Mb]
• Appendix B: Algorithms [183Kb]
• Appendix C: Pathway Sums for Chain Graphs [182Kb]
• Appendix D: Total Escape Probability for Chain Graphs [181Kb]
• Appendix E: Finding the Shortest and the Fastest Paths [2.4Mb]
• References [203Kb]
• Publications [179Kb]

Alternatively, you can download the whole thesis as one file [5.4Mb] or read the HTML version online.

WARNING: Use HTML copy at your own risk. Latex2html utility, which was used to translate Latex version into html, could not cope with this document. Conversion problems that I've spotted include (1) random reordering of equations and artwork, (2) spurious vertical and horizontal black lines in graphics files, (3) some images are erroneously shaded grey, (4) certain mathematical symbols, e.g. $\mathcal{T}$, were not converted at all, and appear as gibberish alfanumeric references, to name but a few.